jp.sbi.celldesigner.plugin

Class PluginParameter

java.lang.Object

jp.sbi.celldesigner.plugin.PluginSBase

jp.sbi.celldesigner.plugin.PluginParameter

public class PluginParameter
extends PluginSBase

This class wraps org.sbml.libsbml.Parameter for the plug-in.

Author:

The Systems Biology Institute

Field Summary

Fields inherited from class jp.sbi.celldesigner.plugin.PluginSBase

sbase

Constructor Summary

Constructors

Constructor and Description
PluginParameter(PluginKineticLaw parent) Constructor case of local parameter
PluginParameter(PluginModel parent) Constructor case of global parameter
PluginParameter(java.lang.String id, PluginKineticLaw parent) Constructor case of local parameter
PluginParameter(java.lang.String id, PluginModel parent) Constructor case of global parameter

Method Summary

Modifier and Type	Method and Description
boolean	getConstant()
java.lang.String	getId()
java.lang.String	getName()
PluginReaction	getParentReaction()
java.lang.String	getParentSBaseID()
java.lang.String	getUnits()
double	getValue()
void	setConstant(boolean constant) Sets the constant of this PluginParameter.
void	setId(java.lang.String id) Sets the id of this PluginParameter.
void	setName(java.lang.String name) Sets the name of this PluginParameter.
void	setUnits(java.lang.String unit) Sets the unit of this PluginParameter.
void	setValue(double value) Sets the value of this PluginParameter.
void	update(PluginParameter parameter) Update all properties of this PluginParameter to the same as the given PluginParameter

Methods inherited from class jp.sbi.celldesigner.plugin.PluginSBase

addCVTerm, ChangeCVTermToMiriamDefinition, getAnnotation, getAnnotationString, getCVTerm, getNotes, getNotesString, getNumCVTerms, getParentSBase, getRelationFromCVTerm, setAnnotation, setAnnotationString, setCVTerm, setNotes, setNotes, setParentSBase, toSBML

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PluginParameter

public PluginParameter(PluginKineticLaw parent)

Constructor case of local parameter

Parameters:

parent - PluginKineticLaw as the parent of this PluginParameter

PluginParameter

public PluginParameter(PluginModel parent)

Constructor case of global parameter

Parameters:

parent - PluginModel as the parent of this PluginParameter

PluginParameter

public PluginParameter(java.lang.String id,
                       PluginKineticLaw parent)

Constructor case of local parameter

Parameters:

id - the id of this PluginParameter

parent - PluginKineticLaw as the parent of this PluginParameter

PluginParameter

public PluginParameter(java.lang.String id,
                       PluginModel parent)

Constructor case of global parameter

Parameters:

id - the id of this PluginParameter

parent - PluginModel as the parent of this PluginParameter

Method Detail

update

public void update(PluginParameter parameter)

Update all properties of this PluginParameter to the same as the given PluginParameter

Parameters:

parameter - PluginParameter

setId

public void setId(java.lang.String id)

Sets the id of this PluginParameter.

Parameters:

id - String

getId

public java.lang.String getId()

Returns:

the id of this PluginParameter.

setConstant

public void setConstant(boolean constant)

Sets the constant of this PluginParameter.

Parameters:

constant - boolean

getConstant

public boolean getConstant()

Returns:

the constant of this PluginParameter.

setName

public void setName(java.lang.String name)

Sets the name of this PluginParameter.

Parameters:

name - String

getName

public java.lang.String getName()

Returns:

the name of this PluginParameter.

setUnits

public void setUnits(java.lang.String unit)

Sets the unit of this PluginParameter.

Parameters:

unit - String

getUnits

public java.lang.String getUnits()

Returns:

the units of this PluginParameter.

setValue

public void setValue(double value)

Sets the value of this PluginParameter.

Parameters:

value - double

getValue

public double getValue()

Returns:

the value of this PluginParameter.

getParentSBaseID

public java.lang.String getParentSBaseID()

Returns:

the parentSBaseID of this PluginParameter.

getParentReaction

public PluginReaction getParentReaction()

Returns:

the PluginReaction if the ParentSBase is PluginKineticLaw and the PluginKineticLaw has a PluginReaction as a parent, null otherwise