jp.sbi.celldesigner.plugin

Class PluginSimpleSpeciesReference

java.lang.Object

jp.sbi.celldesigner.plugin.PluginSBase

jp.sbi.celldesigner.plugin.PluginSimpleSpeciesReference

Direct Known Subclasses:

PluginModifierSpeciesReference, PluginSpeciesReference

public class PluginSimpleSpeciesReference
extends PluginSBase

This class wraps org.sbml.libsbml.SimpleSpeciesReference for the plug-in.

Author:

The Systems Biology Institute

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	MODIFIER ReferenceType "MODIFIER"
static java.lang.String	PRODUCT ReferenceType "PRODUCT"
static java.lang.String	REACTANT ReferenceType "REACTANT"

Fields inherited from class jp.sbi.celldesigner.plugin.PluginSBase

sbase

Constructor Summary

Constructors

Constructor and Description
PluginSimpleSpeciesReference(PluginSpeciesAlias alias) Constructor

Method Summary

Modifier and Type	Method and Description
PluginSpeciesAlias	getAlias()
PluginReaction	getParentReaction()
java.lang.String	getParentReactionID()
java.lang.String	getReferenceType()
java.lang.String	getSpecies()
PluginSpecies	getSpeciesInstance()
void	setAlias(PluginSpeciesAlias alias) Sets the PluginSpeciesAlias of this PluginSimpleSpeciesReference
void	setReferenceType(java.lang.String referenceType) Sets the ReferenceType of this PluginSimpleSpeciesReference.

Methods inherited from class jp.sbi.celldesigner.plugin.PluginSBase

addCVTerm, ChangeCVTermToMiriamDefinition, getAnnotation, getAnnotationString, getCVTerm, getNotes, getNotesString, getNumCVTerms, getParentSBase, getRelationFromCVTerm, setAnnotation, setAnnotationString, setCVTerm, setNotes, setNotes, setParentSBase, toSBML

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

REACTANT

public static final java.lang.String REACTANT

ReferenceType "REACTANT"

See Also:

Constant Field Values

PRODUCT

public static final java.lang.String PRODUCT

ReferenceType "PRODUCT"

See Also:

Constant Field Values

MODIFIER

public static final java.lang.String MODIFIER

ReferenceType "MODIFIER"

See Also:

Constant Field Values

Constructor Detail

PluginSimpleSpeciesReference

public PluginSimpleSpeciesReference(PluginSpeciesAlias alias)

Constructor

Parameters:

alias - PluginSpeciesAlias

Method Detail

setReferenceType

public void setReferenceType(java.lang.String referenceType)

Sets the ReferenceType of this PluginSimpleSpeciesReference. The ReferenceType is the one of the following static fields of this PluginSimpleSpeciesReference: REACTANT, PRODUCT and MODIFIER.

Parameters:

referenceType - String

getReferenceType

public java.lang.String getReferenceType()

Returns:

the ReferenceType of this PluginSimpleSpeciesReference.

getSpecies

public java.lang.String getSpecies()

Returns:

the species for this PluginSimpleSpeciesReference

getSpeciesInstance

public PluginSpecies getSpeciesInstance()

Returns:

the PluginSpecies of this PluginSimpleSpeciesReference

getParentReactionID

public java.lang.String getParentReactionID()

Returns:

the ParentReactionID of this PluginSimpleSpeciesReference

getParentReaction

public PluginReaction getParentReaction()

Returns:

the PluginReaction if the ParentSBase is PluginReaction, null otherwise

getAlias

public PluginSpeciesAlias getAlias()

Returns:

the PluginSpeciesAlias of this PluginSimpleSpeciesReference

setAlias

public void setAlias(PluginSpeciesAlias alias)

Sets the PluginSpeciesAlias of this PluginSimpleSpeciesReference

Parameters:

alias - PluginSpeciesAlias