jp.sbi.celldesigner.plugin

Class PluginBindingRegion

java.lang.Object

jp.sbi.celldesigner.plugin.PluginSBase

jp.sbi.celldesigner.plugin.PluginBindingRegion

public class PluginBindingRegion
extends PluginSBase

 Class for modification bindingRegion.
 An instance corresponds a <BindingRegion> tag.

Author:

The Systems Biology Institute

CellDesigner extension of SBML definition

BindingRegion

id : SId name : string {use="optional"} side : string {use="optional"}

The "id" which may a SId type string in the SBML definition, is treated as a String. When it is input or output, format check is done. If it fails, an SIdFormatException is thrown.

Field Summary

Fields inherited from class jp.sbi.celldesigner.plugin.PluginSBase

sbase

Constructor Summary

Constructors

Constructor and Description
PluginBindingRegion(PluginProtein parentProtein) Constructor

Method Summary

Modifier and Type	Method and Description
double	getAngle()
java.lang.String	getId()
java.lang.String	getName()
java.lang.String	getParentID()
PluginProtein	getParentProtein()
double	getSize() get size
java.lang.String	getType() get type
void	setAngle(double angle) Sets the angle of this PluginBindingRegion.
protected void	setId(java.lang.String id) Sets the id of this PluginBindingRegion.
void	setName(java.lang.String name) Sets the name of this PluginBindingRegion.
void	setSize(double size) set size
void	setType(java.lang.String type) set type

Methods inherited from class jp.sbi.celldesigner.plugin.PluginSBase

addCVTerm, ChangeCVTermToMiriamDefinition, getAnnotation, getAnnotationString, getCVTerm, getNotes, getNotesString, getNumCVTerms, getParentSBase, getRelationFromCVTerm, setAnnotation, setAnnotationString, setCVTerm, setNotes, setNotes, setParentSBase, toSBML

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PluginBindingRegion

public PluginBindingRegion(PluginProtein parentProtein)

Constructor

Parameters:

parentProtein - the PluginProtein as the parent of this PluginBindingRegion

Method Detail

setName

public void setName(java.lang.String name)

Sets the name of this PluginBindingRegion.

Parameters:

name - String

getName

public java.lang.String getName()

Returns:

the name of this PluginBindingRegion

setType

public void setType(java.lang.String type)

set type

Parameters:

type - String

getType

public java.lang.String getType()

get type

Returns:

type

setSize

public void setSize(double size)

set size

Parameters:

size - double

getSize

public double getSize()

get size

Returns:

size

setAngle

public void setAngle(double angle)

Sets the angle of this PluginBindingRegion.

Parameters:

angle - double

getAngle

public double getAngle()

Returns:

the angle of this PluginBindingRegion.

getId

public java.lang.String getId()

Returns:

the id of this PluginBindingRegion.

setId

protected void setId(java.lang.String id)

Sets the id of this PluginBindingRegion.

Parameters:

id - String

getParentID

public java.lang.String getParentID()

Returns:

the ParentID of this PluginBindingRegion.

getParentProtein

public PluginProtein getParentProtein()

Returns:

the ParentProtein if ParentSBase is PluginProtein, null otherwise.