Referred Papers & Documentation

1. Signaling perturbations induced by invading H. pylori proteins in the host epithelial cells: A mathematical modeling approach
   Journal of Theoretical Biology, Volume 248, Issue 1, 7 September 2007, Pages 130-144
   William Dampier and Aydin Tozeren
   SummaryPlus | Full Text + Links | PDF (1880 K)
2. A Comprehensive Molecular Interaction Map for Rheumatoid Arthritis. Wu G et al, 2010, PLoS ONE
3. Reconstruction of the yeast protein-protein interaction network involved in nutrient sensing and global metabolic regulation
4. Gonadotropin-Releasing Hormone Receptor-Mediated Signaling Network in L{beta}T2 Cells: A Pathway-Based Web-Accessible Knowledgebase.

1. Modelling of circadian rhythms in Drosophila incorporating the interlocked PER/TIM and VRI/PDP1 feedback loops
   Journal of Theoretical Biology, Volume 245, Issue 2, 21 March 2007, Pages 290-304
   Z. Xie and D. Kulasiri
   SummaryPlus | Full Text + Links | PDF (442 K)

1. PRIME Pathway Repository: http://tsb.mssm.edu/pathwayPublisher/broadcast/
   by Center for Translational Systems Biology, Mount Sinai School of Medicine, New York

1. BioPP: a tool for web-publication of biological networks. Viswanathan GA, Nudelman G, Patil S, Sealfon SC. BMC Bioinformatics. 2007 May 22;8:168.

1. Experimental and mathematical approaches to modeling plant metabolic networks,
   Phytochemistry, Volume 68, Issues 16-18, August-September 2007, Pages 2351-2374
   Rigoberto Rios-Estepa and Bernd Markus Lange
   SummaryPlus | Full Text + Links | PDF (625 K)
2. A systems biology approach to developmental toxicology
   Reproductive Toxicology, Volume 19, Issue 3, January-February 2005, Pages 281-290
   Audrey Cummings and Robert Kavlock
   SummaryPlus | Full Text + Links | PDF (353 K)
3. Computational representation of developmental genetic regulatory networks
   Developmental Biology Volume 283, Issue 1, 1 July 2005, Pages 1-16
   William J.R. Longabaugh, Eric H. Davidson, and Hamid Bolouri

1. Methods for Simulating the Dynamics of Complex Biological Processes
   Methods in Cell Biology, Volume 84, 2008, Pages 807-842
   Maria J. Schilstra, Stephen R. Martin and Sarah M. Keating
   Abstract
2. Standards, Platforms, and Applications
   Computational Systems Biology, 2006, Pages 103-125
   Herbert M. Sauro
   Abstract